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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctctcatacaataacttttattaaaaaaaagtattcgtcatctctatcaaatttatttagcaaatttctatgctcataatttgttcagGTCACCGTGTCATTGGCAAGTGTTGCTTCATTGTTTCTTCTCTCTAAGAGCAAAGGTTTCGTTGGGATATGGATTGCACTAACCATCTACATGAGTCTTC

Basic information

species Glycine max
transcript GLYMA09G15550.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168058|gb|HO013321.1|HO013321
EST:     ATGGTGTGAACTATGGGGCATCTGATTTTGTATATTCTGCATACTCCTTG                         GTCACCGTGTCATTGGCAAGTGTTGCTTCATTGTTTCTTCTCTCTA
genomic: ATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctc ... atttgttcagGTCACCGTGTCATTGGCAAGTGTTGCTTCATTGTTTCTTCTCTCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtcatctctatcaaatttatttagcaaatttctatgctcataatttgttcagGTCACCGTGTCATTGGCAAGTGTTGCTTCATTGTTTCTTCTCTCTAAGAGCAAAGGTTTCGTTGGGATATGGATTGCACTAACCATCTACATGAGTCTTC
                                              tttgttc  CT-rich tract
           tatcaaatttatttag  TA-rich tract