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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctccttctaagccttttcttgtttactctatttatttatttgtaatctgttccttaccttcatttactgtttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT

Basic information

species Glycine max
transcript GLYMA09G04260.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04260.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 12
gtttcctccttctaagccttttcttgtttactctatttatt--tatttgtaatct---gttccttaccttcatttactgtttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT
         | | |    ||||||     |||  |    ||  |  ||||  | |   ||  || ||||||  | ||  |||  ||||||||||||||||||||||| | ||||| |||| |||||||||  | || ||  |||| ||||| ||||||||||| 
---gttggatcccataatttttctaaaaaacttgacgccttgtttcttgtggttttaggtctctcaccttctgtcaccttttacagGATGTTGTTTTGGCTAGAGTACTAGATGATGCTATTGTTGCAAACTTGAATTCTGTAATCCATGCGAACAATGCCATA

upper sequence: GLYMA09G04260.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 11
gtttcctccttctaagcct--tttcttgtttactctatttatt-tatttgtaatctgttccttaccttcatttactgtttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT
||||    |||  | ||     || ||  |||||    |  || |||||||| | |  | ||||||||  || |   |||||||||||| |||||| |||||||  ||||||||||||| |||||||||||||| |||||||| ||| |||| |||||| ||
gtttggctctttgacgctgaacttgtttgttacttgcctggttgtatttgtagtgtaattcttaccttatttcaacttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATTCCATAATTCATTCAAATAATGCCGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactctatttatttatttgtaatctgttccttaccttcatttactgtttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT
                             tccttac  putative branch site (score: 2)
                                             ctgttttt  putative PPT
       tatttatttatttgta  TA-rich tract