1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttctatctgataattgcttgcccttgcctatgagaaaaagttatactttgaaacagttatacataatacaaaaaatcccacttattctacctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCTGTA
species | Glycine max |
transcript | GLYMA09G01270.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAAEST: gi|15813259|gb|BI785534.1|BI785534
genomic: TCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
ctttgaaacagttatacataatacaaaaaatcccacttattctacctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCTGTA
tcccacttattctacc CT-rich tract
agttatacataataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatctgataattgcttgcccttgcctatgagaaaaagttatactttgaaacagttatacataatacaaaaaatcccacttattctacctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCTGTA
- ctatctg
- - - - - - - - cttgccc
- - - - - - - - - - - - -gcctatg
- - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa