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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctatctgataattgcttgcccttgcctatgagaaaaagttatactttgaaacagttatacataatacaaaaaatcccacttattctacctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCT

Basic information

species Glycine max
transcript GLYMA09G01270.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01270.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s0187g00300.t01 (Vitis vinifera), 3'ss of exon 8
---ttctatctgataattgcttgcccttgcctatgagaaaaagttatactttgaaacagttatacataatacaaaaaatcccacttattctacctctctg--tagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCT
    ||  | |     || ||  |  |  |   |   ||   ||||||  || |     || |  ||     ||    |   |||| ||||| |||   |  ||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||  | ||||| |||
tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgat----taatgtttaatactt-ttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195581|gb|HO043972.1|HO043972
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: gi|15202674|gb|BI425525.1|BI425525
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: gi|14011019|gb|BG725941.1|BG725941
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: gi|7232656|gb|AW568010.1|AW568010
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: gi|7232634|gb|AW567988.1|AW567988
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: gi|298184616|gb|HO029829.1|HO029829
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: gi|10847964|gb|BF071656.1|BF071656
EST:     GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTT                         ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
genomic: GCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgaaacagttatacataatacaaaaaatcccacttattctacctctctgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCT
                              tcccacttattctacc  CT-rich tract
         agttatacataataca  TA-rich tract