1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaaacaacaccctcctgctttttaggaatagcagggtgaatatcttgttaagtggttcttctttaatttcattgacttttaatccttgtttttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGC
species | Glycine max |
transcript | GLYMA08G32090.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|254335594|gb|GR847122.1|GR847122
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGEST: gi|22927236|gb|BU544375.1|BU544375
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATG
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTANNNGAGGTGTACTTTGCTEST: gi|120494681|gb|EH222848.1|EH222848
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|208159114|gb|GD955199.1|GD955199
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|22929333|gb|BU546472.1|BU546472
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|192313582|gb|FK004164.1|FK004164
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAG-AGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTT-GATCGTGCA-CTGTATTGGAG-TGTACTTTGCTEST: gi|208222091|gb|GE020389.1|GE020389
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTNTACTTTGCTEST: gi|6341921|gb|AW164745.1|AW164745
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|51336342|gb|CO980208.1|CO980208
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|208171261|gb|GD973170.1|GD973170
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|254335595|gb|GR847123.1|GR847123
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|7692091|gb|AW760206.1|AW760206
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGCGCAACTGTATTGGAGGTGTACTTTGCTEST: gi|193539115|gb|FK496433.1|FK496433
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: TGCCGCAAGCGGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTEST: gi|120494767|gb|EH222934.1|EH222934
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATT
EST: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
tgttaagtggttcttctttaatttcattgacttttaatccttgtttttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGC
ttttaat putative branch site (score: 3)
tccttgtttttgctcc CT-rich tract
tttaatttcattgact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacaacaccctcctgctttttaggaatagcagggtgaatatcttgttaagtggttcttctttaatttcattgacttttaatccttgtttttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA