1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcaaggaataaggaattaaggtaatctgtttgcttacacagatcttgaaatcttcaaggccctatctttatttttgttgtgtttattcttttttttgcagCCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTAACCGAGTTGATTGACGCTCGGAGACGAGCTGGGATCCATTGTCGGAGCT
species | Glycine max |
transcript | GLYMA08G26860.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGAGTAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACT CCTACAATATTTTATGEST: gi|207834720|gb|GD805529.1|GD805529
genomic: GGA-TAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACTgtgagtcctt ... ttttttgcagCCTACAATATTTTATG
EST: GGGATAAGCTCATGTAGGGATATGCATATATTTTGACTCATCCTGGAACT CCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTAEST: gi|207811880|gb|GD783129.1|GD783129
genomic: GGGATAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACTgtgagtcctt ... ttttttgcagCCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTA
EST: GGGATAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACT CCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTAEST: gi|193488763|gb|FK454962.1|FK454962
genomic: GGGATAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACTgtgagtcctt ... ttttttgcagCCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTA
EST: GGGATAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACT CCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTA
genomic: GGGATAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACTgtgagtcctt ... ttttttgcagCCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTA
tgaaatcttcaaggccctatctttatttttgttgtgtttattcttttttttgcagCCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTAACCGAGTTGATTGACGCTCGGAGACGAGCTGGGATCCATTGTCGGAGCT
tgtttattcttttttt CT-rich tract
tatctttatttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaggaataaggaattaaggtaatctgtttgcttacacagatcttgaaatcttcaaggccctatctttatttttgttgtgtttattcttttttttgcagCCTACAATATTTTATGACCATTTCTATGATTTTGGCATCCACGATGTATTAACCGAGTTGATTGACGCTCGGAGACGAGCTGGGATCCATTGTCGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - -cttcaag