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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcattaatcatgaatattatttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC

Basic information

species Glycine max
transcript GLYMA08G24290.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 3'ss of exon 9
gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcatt--aatcatgaatattatttgatgcccttagctttc---tattc--cagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
|| |  |   |||  | | ||   |   |  | |  | |||||||  || ||| |||  ||  |||  |  ||   | ||   | ||   ||||  ||  | ||||| || || ||||||||||| ||||| ||||||||||| ||||||||||||||||||||  | |||||    |  || || ||||| |
gtaagaaattagtccagt-attctttcaaaagaacaccaatcatttcaagcataaatcatacgtgaaactgttttttatcaaatgtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------gtgatgagaaagttgatttatcaatctgatcgtaatcgaatca-ttaatcatgaatattatttgatgcccttagc-tttcta------ttccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                                     ||  | ||||| |   |   | |||   |   | ||  ||| | | ||  |   | | |  |   |  | ||| | |||| |      || ||||   || | || ||||| || ||||||||||||||||| ||| |||||||||||||||| ||||||| |||  | |||||  |||| || || || || |
gtgagaaagtggtctgatcatttgaaatatgtgatcgcctcttgatgttagtagttctaagaaattctttccgt-aatgaaagttttattaaataaatcaagaaaataaaatcctaattctctttaacatttccaaatattttgcagGCTATTCTTTTATTTCAGAAAATAGAAGGTGTGGAAGTATGCTTATTTGGCATGTATGTCCAAGAATATGGTGCAGAATGCAAATTCCCAAACCAACGTC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G470556_T01 (Zea mays), 3'ss of exon 8
gtgatgagaaagttgatttatcaatctgatcgt-aatcgaatcattaatcatgaatattatttgatgcccttagctttctattc-----cagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
    | ||||       || ||| |   | | | ||||| |     | |||  ||| || |   |  |  ||   | |  | |      ||||  ||| | ||||| || |  ||||||||||||||||| || |||||||||||||||||||||||||||||  | |||||    |  || || |||||||
---gtaagaattcattcttgtcatttgaagcatgaatcgtagttacactcactaat-ttctgcaacactattttttatgaaatgttggacagGCTGTTCTCTTGTTCCAGAGAATAGAAGGTGTGGAAGTATGTCTATTTGGCATGTATGTTCAAGAATTTGGTGCAGAATGCTCTTCCCCGAACCAGCGCC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G139977_T02 (Zea mays), 3'ss of exon 2
gtgatgagaaagttgatttatcaatctgatcgt-aatcg-aatcattaatcatgaatattatttgatgc--ccttagctttc-----tatt--ccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
    | ||||       || ||| |   | | | ||| | | |||  | |||    || || ||  |||  || ||  |||      | ||   ||||  ||| | ||||| || || ||||||||||||||||| || |||||||| ||||||||||||||||||||  |||||||    || || || ||||| |
---gtaagaattcattcttgtcatttgaagcatgaattgtagtcacaactcacacgtactaatttctgcaaccgtatatttatgaaatgttggacagGCTGTTCTCTTGTTCCAGAAAATAGAAGGTGTGGAAGTATGTCTATTTGGAATGTATGTTCAAGAATTTGGTGCTGAATGCTCTTTCCCGAACCAGCGTC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 9
-------------------------------gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcattaatcatgaatattatttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                |          ||| ||| | | | ||| | |   | |  ||| |  | ||   | |||    | || |   | || | || ||||   || |||||||||| ||||| |||||||| ||||| ||| |||||||||||||||| || ||||||||| | || | |   | ||| ||||||||||
gtacagattgtgtatgcttggttcttatttcttttccttctttttgttttctaattatgaccttctgcta--catgatgcctgttgactatcaacttccatactcattttttttcagGCCATTCTGTTGTTTCAGAAGATTGAAGGTGTTGAAGTATGCTTATTTGGCATGTATGTCCAGGAATTTGGAACAGATTCTGCGTCTCCCAATCAGCGCC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 3'ss of exon 10
-------------------------------gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcat-taatcatgaatattatttg-atgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                               ||  | |     |  ||   | | | |  | |   ||   || |  ||| ||   | | | |   ||||| ||   ||  | |||||||||||| |||||||||||||||| ||||| || ||||| ||| ||||||| ||||| || |||||||| || ||||||||   |||||| ||||| ||||
gtaagaatgatcaaggcgtattgttgttactgtatttactgcatatatgcgttatttttctggagttcctctcgtacaattatccttctcactcccatgccatt---ttatttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGATGTACGTCCAAGAATTCGGTTCTGAATGCGCATTTCCCAATCAACGCC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
----------------------gtgatgagaa--agttgatttatcaatctgatcgtaatcgaatcattaatcatgaatattat--ttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                       | ||   |     || || |    || | ||  |    | ||   |       | || |||  ||  ||| |     ||| | |  ||||| ||| || |||| || |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| ||||||  |  ||| ||||| ||||
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 8
gtgatgagaaagttgatttatcaatctgat-cgtaatcgaatcattaatcatgaat---attat---ttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
    |  | | | || | ||| ||  ||||   |  ||  ||  || |  | || |   |||||    ||| |    |   ||||  ||||||||| ||||||||||||| ||||| ||||| || ||||| ||| ||||||| ||||||||||||||||||||||| ||||||| ||| || ||||| || |
---gtatgcaggatg-tatattaagttgatgttttttcatatagttgacaaagacttaaattatgaactgaagattgtctttttcgtttccagGTAATTTTGTTGTTTCAGAAGATTGAAGGAGTAGAAGTATGCTTATTTGGGATGTATGTTCAAGAATTTGGATCAGAATGTCTATTCCCAAATCAACGTC

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: PP1S193_70V6.1 (Physcomitrella patens), 3'ss of exon 10
----------------------------------------------------------------gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcattaatcatgaatattatttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                                                 | | ||     ||| ||| |   |   ||  ||||  || | | | | ||    | |  ||  |||  ||   ||| |  | ||||| || ||| ||||||||||||| |||||||| |||||||| || || ||||||||||| ||||| |||||    |||||     |||| ||||||||  
gtatattttgcttgtggtttagtgtggccaacaaagtttccaagcttgtctttcaaaactcatgttcacgatgtttttgctttgtggtttcaatgttaatataagcgt-atttatagggacttgtt--tgctatt---tttgttattcagGTGGTATTGCTGTTTCAAAAGATCGAAGGTGTAGAAGTTTGTCTCTTCGGCATGTATGTCCAAGAGTTTGGGATGGAATGCTCTCTTCCAAATCAGCGAA

upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
lower sequence: PP1S462_17V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------------gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcattaatc---atgaatattatttgatgcccttagcttt----ctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                              |  ||  || || || ||   |||      |   | |||  ||  ||    |||   |     |||||   ||    ||    |||||| |||| |||||| |||||||||||||||| || || |||||||| || || |||||||| |||||||| |||||   ||||||     |||| ||||||||  
gtgcgatatgtttctggtttagcaaggcctacgtggttatttgattttttgtaaatgtagagttgcgaattgatatggttttgaaatatctatgttaatgtccacgggctgatgtggttgatgttagtgctattc-agGTTGTTTTGCTGTTTCAAAAGATAGAGGGGGTAGAAGTTTGTCTCTTCGGCATGTACGTTCAAGAGTTTGGGGTTGAATGCTCTCTTCCAAATCAGCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatcgaatcattaatcatgaatattatttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
                                          ctttctattcc  CT-rich tract
       aatcattaatcatgaa  TA-rich tract