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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccctttgtgcctactctatctttttaattcccccaaacttcattgaatattattttggctctctttgtcatgtgaaagcccattttcacctctcctggttaaggggaagcctagtaatgtagtacgtgtgtatatttctatatcagGCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAG

Basic information

species Glycine max
transcript GLYMA08G22390.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22390.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G20650.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaaccctttgtgcctactctatctttttaattcccccaaacttcattgaatattattttggctctctttgtcatgtgaaagcccattttcacctctcctggttaaggggaagcctagtaatgtagtacgtgtgtatatttctatatcagGCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAG
                                               | | | ||  || |  |||   | |||| | |     | |||| |    | ||    ||  |  ||     |||   |       ||  || |    |  |||||||| | ||||||||||||||||| || |||||||||||| | || ||||| |||||||||
----------------------------------------------gtaagtctttgttcgattcttgct-tcatatca----tccttttga----ttctaaccaaatgcgag----ataacaaaactaacttgattagtatctttccagGCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCTCTTTTGTCTTGAGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6848281|gb|AW350571.1|AW350571
EST:     GGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAA                         GCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTG
genomic: GGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAAgtaacccttt ... tctatatcagGCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctggttaaggggaagcctagtaatgtagtacgtgtgtatatttctatatcagGCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAG
                                         tatttct  CT-rich tract
                                     tgtatatttctatat  TA-rich tract