1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattatgaaattggaccatttgatgttcagcatttgaaaaaatgtttactatgtgcttatcctcaactcaatgagtcattattgtgaaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCCAGGTTACTTCAAGAGCAGCAGGAGAAATACATTTCATAATATTGTTTTC
species | Glycine max |
transcript | GLYMA08G21830.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAG GCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCCEST: gi|213600069|gb|DB976028.1|DB976028
genomic: CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatga ... aaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC
EST: CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAG GCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC
genomic: -ACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatga ... aaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC
atgtttactatgtgcttatcctcaactcaatgagtcattattgtgaaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCCAGGTTACTTCAAGAGCAGCAGGAGAAATACATTTCATAATATTGTTTTC
attattgtgaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatgaaattggaccatttgatgttcagcatttgaaaaaatgtttactatgtgcttatcctcaactcaatgagtcattattgtgaaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCCAGGTTACTTCAAGAGCAGCAGGAGAAATACATTTCATAATATTGTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA