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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccatcaatctcaaaagaccttgaaaattttcttttcatttatatcctattgcttcaaccttgtctgactttatgaatatactctattcacaagctataattcttgaatggaagtgtaattctttgtaaattgcaatgttacccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGATATCACTAAAATTGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCA

Basic information

species Glycine max
transcript GLYMA08G21380.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21380.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 3'ss of exon 11
gtaaaccatcaatctcaaaagaccttgaaaattttcttttcatttatatcctattgcttcaaccttgtctgactttatgaatatactctattcacaagctataa-----ttcttgaatggaagtgtaattctt-tgtaaattgcaa-----tgttac----ccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGATATCACTAAAATTGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCA
||||  |     | |||| |  || |   ||       |  ||| ||       |  | |||    |    ||   |   | | |||| ||||  || | | ||     ||| ||    |||    |   ||| |||  |  |||      ||| |       || ||||||||||| |||| || ||||||||||| |||||||||||||| ||||| |||||||| |  ||||| || | ||| ||||| |||||| | || ||||||
gtaattc-----tttcaagatgccatctgaaaccaaagtaaattaatgg-----tagtgcaaagcagaaacaccagaaagaaacactcgattctaaaccaaaaagcaccttcatgggatgaatcaaagcccttatgtttacagcagaagtgtgtcatgttattttctcagGAAGCCTTTGGAGCATTTCTTGAAGGCAGTAGATGAAATCACTTTGAAGGATATCACCACCATTGCCCAGAGGATCATTTCTTCACCTCTTACAATGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023865|gb|BM094899.1|BM094899
EST:     ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG                         GAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACG
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACG
EST: gi|18732951|gb|BM527341.1|BM527341
EST:     ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG                         GAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
EST: gi|8826432|gb|BE210162.1|BE210162
EST:     ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG                         GAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
EST: gi|10233365|gb|BE802253.1|BE802253
EST:     ATGATTGCATCACAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG                         GAAGCCTGCGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTCGAATGA
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattcttgaatggaagtgtaattctttgtaaattgcaatgttacccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGATATCACTAAAATTGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCA
                                          ttacccttttc  CT-rich tract
                    taattctttgtaaatt  TA-rich tract