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gtatgggattaaaacttaatctatatgtggttctgttattcttgagcctgcatcttactattttgtttcatttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAG
species | Glycine max |
transcript | GLYMA08G20830.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAG CAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGEST: gi|14990248|gb|BI315921.1|BI315921
genomic: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGgtatgggatt ... ttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGG
EST: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAG CAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGGAGTACTGANGCTACAACEST: gi|298194583|gb|HO043055.1|HO043055
genomic: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGgtatgggatt ... ttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAAC
EST: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAG CAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAACEST: gi|19936100|gb|BQ080722.1|BQ080722
genomic: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGgtatgggatt ... ttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAAC
EST: TGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAG CAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAACEST: gi|254342009|gb|GR853146.1|GR853146
genomic: TGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGgtatgggatt ... ttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAAC
EST: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAG CAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAAC
genomic: GAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGgtatgggatt ... ttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAAC
gtggttctgttattcttgagcctgcatcttactattttgtttcatttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAG
tttcattt CT-rich tract
tattttgtttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgggattaaaacttaatctatatgtggttctgttattcttgagcctgcatcttactattttgtttcatttgattccagCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG