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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatagcatgctatcttattgtattagctgattgattgttgagattaggttattttagtggaagtgacatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGTGACGGACAGTTAG

Basic information

species Glycine max
transcript GLYMA08G20320.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207836917|gb|GD807540.1|GD807540
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|207758918|gb|GD732633.1|GD732633
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|193715822|gb|FK649013.1|FK649013
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|207693296|gb|GD675991.1|GD675991
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCA
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCA
EST: gi|9986548|gb|BE660656.1|BE660656
EST:     AAGTGTNACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: AAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|208300236|gb|GE098909.1|GE098909
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|193523934|gb|FK480027.1|FK480027
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|193501031|gb|FK465024.1|FK465024
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|193304917|gb|FK271772.1|FK271772
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|26048756|gb|CA785209.1|CA785209
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|15204184|gb|BI426952.1|BI426952
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|208142337|gb|GD935335.1|GD935335
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|298187041|gb|HO034190.1|HO034190
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGT
EST: gi|14990359|gb|BI316032.1|BI316032
EST:     TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT                         GGCCCTGCTGCTGGACCCAGTTCAGGCATGCC
genomic: TTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATTgtaagtgata ... acatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagctgattgattgttgagattaggttattttagtggaagtgacatttgcagGGTCCTGCTGCTGGACCAAGTTCAGGCATGCCACCACTGGCTTCAAATGGTGACGGACAGTTAG
        gattgat  putative branch site (score: 4)
                      attaggttatttta  TA-rich tract