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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaattttggaccatgtggctgttcttactagtcaaaatacatactttgagaaatttcctcaataatactaaataaattcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGAGGTTTGGACAGTCTCCAGTATTTGTAGCCTCCACACTTTTGGATGATGG

Basic information

species Glycine max
transcript GLYMA08G15380.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G09870.1 (Arabidopsis thaliana), 3'ss of exon 10
gttagaattttggaccatgtggctgttcttactagtcaaaatacatactttgagaaatttcctcaataatactaaataaattcttttccagGAACCAACAATGAGAAGA---CATCCAATCTGACTCAAACAAAGTTGGAGAAGAGGTTTGGACAGTCTCCAGTATTTGTAGCCTCCACACTTTTGGATGATGG
    | |    | |  |     ||||      ||||   | | |||    |||  | |||  |   |  | ||          |||   ||| || ||  ||| |  ||   || |  |   | | |||   ||||||||||||| ||||||||||||||| || ||||| || ||  |   | ||||  |   
----gtaaccagaataaatcctctgtatcatttagtttcagttcat-tgctgaacacttttttgtttctttct---------ttttcttagGCACTAATGATGCGGCGAAATCACCAGAGGCGGCACAATTGAAGTTGGAGAAGAAGTTTGGACAGTCTCCTGTTTTTGTTGCGTCTGCTGGTATGGAGAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193479750|gb|FK445431.1|FK445431
EST:     CGGGGAACGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: CGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208160824|gb|GD961640.1|GD961640
EST:     CGGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: CGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208044214|gb|GD838790.1|GD838790
EST:     GGCGGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: GGCGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208332861|gb|GE126984.1|GE126984
EST:     GGCGGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: GGCGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaatacatactttgagaaatttcctcaataatactaaataaattcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGAGGTTTGGACAGTCTCCAGTATTTGTAGCCTCCACACTTTTGGATGATGG
                                 tactaaa  putative branch site (score: 1)
                                            ttcttttcc  putative PPT
                  aaatttcctcaataat  TA-rich tract