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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtatttgtcccttttccctctgttgctcctctcacattttcttattgccgccattttaagagggagttggggacacggaagggaagtctggtttatgaaaaatggtagaattgtgactcttcacatctcaagtaatgcttgtttctggtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATGTTCTTTTGAACTGTCACCGACTGAGTTGGTGAGGAATTTCGTTAAACGA

Basic information

species Glycine max
transcript GLYMA08G15340.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477564|gb|BG507396.1|BG507396
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|58025009|gb|CX711750.1|CX711750
EST:     GGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: GGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|209699016|gb|BW656131.1|BW656131
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|6724924|gb|AW309323.1|AW309323
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGCACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|23064146|gb|BU578919.1|BU578919
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|16347022|gb|BI972617.1|BI972617
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|21994862|gb|BQ786390.1|BQ786390
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|15204177|gb|BI426945.1|BI426945
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCANGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|13477418|gb|BG507306.1|BG507306
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|14990230|gb|BI315903.1|BI315903
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
EST: gi|10843673|gb|BF066947.1|BF066947
EST:     AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAG                         GGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG
genomic: AAGCTGCTTTGAAGGTTTAAGAAGGTTCGAATCAGCAGTTACTGTCACAGgtaaagtatt ... gtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtagaattgtgactcttcacatctcaagtaatgcttgtttctggtaaatgcagGGGCATCTCAATGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAAAATGTTCTTTTGAACTGTCACCGACTGAGTTGGTGAGGAATTTCGTTAAACGA
                           aagtaat  TA-rich tract