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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaatgttttctctttattctttttaaatatccattggttagttgtttaatgtctgtttaagcgcactcgttaaagtctaacaattaattatgattgttccattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG

Basic information

species Glycine max
transcript GLYMA08G14040.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G162881_T01 (Zea mays), 3'ss of exon 4
gttaaatgttttctctttattctttttaaatatccattggttagttgtttaatgtctgtttaagcgcactcgttaaagtctaacaattaattatgattgttccattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG----------------------------------------------
                                           || |  |  | |||  |  |  |  ||| |  || |  |         | | ||| || |||  ||     | ||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||                                              
-------------------------------------------gtggagtggtatctcct--actgttctctt--aacttcatttgaagcctgt-attcttacatattgttttctgcagAACGACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGGTATAATCATCATCCATATTACTCTGATGTATTGCATTTTACGTGG

upper sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 11
gttaaatgttttctctttattctttttaaatatccattggttagttgtttaat-gtctgtttaagcgcactcgttaaagtctaacaattaattatgattgttccattctgggcattt--cagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG
                   ||| ||      |||   || ||  || || | |  |||     | | | ||| ||   | ||  |  ||| ||||    | |  |   |   |  ||  |||||||||||||| || || ||||| ||||| ||||| || |||| ||||||||||
------------------gttccttgctt-catcatctgtttcattcttcattcatcttccctaactctctc-ttcttgcctgcc--ttacttata--cgctttaccttaaactgttaacagAATGATTTGGTACACGGTTGGGGTCTTGACTTTGCACTCAGAAGATGTGTTGAG

upper sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 10
gttaaatgttttctctttattctttttaaatatccattggttagttgtttaatgtctgtttaagcgcactcgttaaagtctaacaattaattatgattgttccattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG
                   ||    |||  |    ||   || | |  || || |||   ||      ||| ||     ||  ||  ||||| |   ||  |||        |   |||||||||||||| || || ||||| ||||| ||||| || |||| ||||||||||
------------------gttacacttactttattatctattggctccttcatatcttcatataatgtctcctt-----cttgcacctaattgtatatgaacca--------aaaacagAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCACTGAGAAGATGTGTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207752629|gb|GD724957.1|GD724957
EST:     CTCCAGTGTTTTCACGAGATGCATGGCGTTGTGTCTGGCATATGATTCAG                         AATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
genomic: CTCCAGTGTTTTCACGAGATGCATGGCGTTGTGTCTGGCATATGATTCAGgttaaatgtt ... ggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcactcgttaaagtctaacaattaattatgattgttccattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG
        ttaaagtctaacaatt  TA-rich tract