Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctcagaccaatctatgtggaaattatcattgttctctaaattaactctagtattgtagcaatcaattccgagaattcttcctcctagtgtccccacgtcccaacttgctagaatcttctggattttgtaattgttcatcttcattatacttaattacaaaatggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGGGGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA

Basic information

species Glycine max
transcript GLYMA08G13110.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 3'ss of exon 11
gtacttctcagaccaatctatgtggaaattatcattgttctctaaattaactctagt-attgtagcaatcaattccgagaattcttcctcctagtgtccccacgtcccaacttgctagaatcttctggattttgtaattgttcatcttcattatacttaattacaaaatggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGGGGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA
                                        |  | ||   ||||| | | |    ||   ||||        |||   || | || || |   | || || ||| |  ||      | |||  |   ||    |   |||||    ||  ||| ||          || ||||||| ||||||||| | ||||| || |||||||||||||||||||| || |||||| ||  ||| |||||||| || ||| |||| | | |   ||| |
---------------------------------------gttgacataggctctatttagttgctcagctaattatagattgtctctatctttgtttcactttgaccaaaattgttccaaatcaaagaattaagct-ttacaaaatgtcatt----ttttttataa----------tgtagAATGTACCTCCTGCTCTACTTGTGCGATTTCTGAGGGAGCATCGTTCTGAATGGGCTGATCCTGGTGTTGATGCTTATTCTGCTGCTTCTTTGCGAGCCA

upper sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 11
gtacttctcagacc-aatctatgtggaaattatcattgttctctaaattaactctagtattgtagcaatcaattccgagaattcttcctcctagtgtccccacgtcccaacttgctagaatcttctggattt-tgtaattgttca--tcttcattatacttaattacaaa-----atggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGGGGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA
|||| |   |   | |  | |  | | ||     |||| |   | |||  |  ||| | |         ||| | |     || |  |||  | || | || |  |  |  ||  | ||||||||||| ||    | | | || |  | ||   ||||   |  |   |      ||     ||||||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||||||| | ||||| |||||||| || ||| |||||||||| |||||||
gtacatagaaagtctagacaaccttgtaaggtctattgatag-tgaatgtatgctaatttgtggatgtccaacttc---tgttttatctctcaatgccacccca-caaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttgaatctgcagAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAACACCGTTCTGAGTGGGCTGACTATGGTGTTGATGCTTATTCTGCTGCATGTCTTAAAGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattttgtaattgttcatcttcattatacttaattacaaaatggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGGGGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA
                            acttaat  putative branch site (score: 4)
                    ttcattatacttaatt  TA-rich tract