1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagtgttattattcttcatgaagtgaactcatgcttttcttcacttttatggggcacatattgactcttttatgactaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATTCAAGTTTCAGCTGGCTTTATGATATTCTTCTCAATGTTAG
species | Glycine max |
transcript | GLYMA08G12360.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCTGAATGCCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGT AGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATEST: gi|22525738|gb|BU084549.1|BU084549
genomic: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGTgtgagtgtta ... actaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
EST: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGT AGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATEST: gi|58014211|gb|CX700953.1|CX700953
genomic: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGTgtgagtgtta ... actaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
EST: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGT AGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATEST: gi|58024713|gb|CX711454.1|CX711454
genomic: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGTgtgagtgtta ... actaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
EST: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGT AGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATEST: gi|22525586|gb|BU084397.1|BU084397
genomic: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGTgtgagtgtta ... actaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
EST: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGT AGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATEST: gi|58018670|gb|CX705412.1|CX705412
genomic: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGTgtgagtgtta ... actaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
EST: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGT AGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
genomic: ATCTTGCTGAATGGCCTTTTCGGAACACTCACTGGTTCTACTGTTTCTGTgtgagtgtta ... actaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCAT
catgcttttcttcacttttatggggcacatattgactcttttatgactaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATTCAAGTTTCAGCTGGCTTTATGATATTCTTCTCAATGTTAG
tattgac putative branch site (score: 2)
acttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttattattcttcatgaagtgaactcatgcttttcttcacttttatggggcacatattgactcttttatgactaagacagAGAGAATGTGGGGCTTCTAGGAAGCAATCGTATTGGTAGTAGAAGGGTCATTCAAGTTTCAGCTGGCTTTATGATATTCTTCTCAATGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG