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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcacgagacaaatgataagtagtttcttttataaaaataacaattcaattgattttatttgcttactatatgcatattaaattttgtcattatatgacagGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGTGAGTTGGACCAGTCACTAGCTTCTG

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 10
gcacgag-acaaatgataagtagtttcttttataaaaataacaattcaattgattttatttgcttact-atatgcatattaaattttgtcattatatg-acagGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGTGAGTTGGACCAGTCACTAGCTTCTG
  |  |  |  | | |||   | |     |  | | ||| |   | |||||  ||| | |    || | |  |    |||   |||  | | | | |  | |||| || || ||||||||||| |||||||||||||| |||||||||||||| |||||| | || ||||| |||||||||||||| |   |||| |||  ||
-tataaacatgatttatagaaattgggaatattgagaattatgttacaatt--tttaagtgatctatttacgttttaatttcctttgattaatttgtttatagGCATACCCCCAAGAAAAGGTCGGTGTGTTTGTAAGGCGAGGTAAAGGTGGACCTCTTTCCGTCGTTGAGTACAGTGAGTTGGATCCAACACTGGCTAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313957|gb|AI461076.1|AI461076
EST:     GTTGTCCGCAAG                         GCATATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGT
genomic: GTTGTCCGTAAGgtaacagatc ... tatatgacagGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGT
EST: gi|6454569|gb|AW185252.1|AW185252
EST:     GTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAG                         GCATATCCACAAGAAAA
genomic: GTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAGgtaacagatc ... tatatgacagGCGTATCCACAAGAAAA
EST: gi|151397105|gb|EV266978.1|EV266978
EST:     GTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAG                         GCATATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGT
genomic: GTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAGgtaacagatc ... tatatgacagGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGT
EST: gi|254329705|gb|GR839258.1|GR839258
EST:     GTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAG                         GCATATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGT
genomic: GTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAGgtaacagatc ... tatatgacagGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattgattttatttgcttactatatgcatattaaattttgtcattatatgacagGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGTGAGTTGGACCAGTCACTAGCTTCTG
              tgcttac  putative branch site (score: 2)
      attttatttgcttact  TA-rich tract