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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactttttcgttggctaaaattgttgattttgcaaaataatatcttctctaatgatgggttttatcagAAACCTGAAGCTATAACTTCAAATCGCAAGTATCGTGTAAGAGTGTTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA

Basic information

species Glycine max
transcript GLYMA08G08230.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08230.1 (Glycine max), 3'ss of exon 11
lower sequence: AT4G15570.1 (Arabidopsis thaliana), 3'ss of exon 10
-------gtaagtactttttcgttggctaa------------aattgttgattttgcaaaataatatcttc--tctaatgatgggtttta-----tcagAAACCTGAAGCTATAACTTCAAATCGCAAGTATCGTGTAAGAGTGTTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA
       | |||   || |||   | | ||            | || ||  ||||   | ||| || |  |  | |  ||||    |||      ||||||||| || |   | | | | | ||| |||||  |  || | ||  | || || || |||||||||||||| |||||||||||||||||| || || | |
gtaagtcggaagattttattctgagacaaatggtaaccccacatttatttcttttatcatatagtaaccccacttttctgattctcttttgatgttcagAAACCGGAGGTGGTTAATGCGAGTCGGAAGTACAGATTACGTGTACTTGTCTGTGCTCCATCAAACTCTGCACTTGATGAGATTGTGTTGCGGCTTCTGA

upper sequence: GLYMA08G08230.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv19s0015g00460.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtacttt-ttcgttggctaaaattgttgattttgcaaaataatatcttctctaatgatgggttttatcagAAACCTGAAGCTATAACTTCAAATCGCAAGTATCGTGTAAGAGTGTTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA
||||||       | | |   | | | || | |||| |    |  || |  |  || | |||  |||||  |||||||| |||    | ||||| | ||| || ||||||||| | ||  | ||||| || |||||||| ||||| |||||||||||||||||| |  || | |
gtaagtctgaggcttgctattttatagtgctcatttgg----aggatcttctgactta-gatatgttttg-cagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaaaattgttgattttgcaaaataatatcttctctaatgatgggttttatcagAAACCTGAAGCTATAACTTCAAATCGCAAGTATCGTGTAAGAGTGTTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA
                                 ctctaat  putative branch site (score: 3)
                                              ttttatc  putative PPT
             attttgcaaaataata  TA-rich tract