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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgattgtatttttctggagtgctttgtaatcttatagttttggctgactgggatttatgacatatgtgaatctcatgcagATCAACAATCGGTCACTTCAAGATATGTATATATTTGGAGATCCTCTGCTGGTTCCTATTATTATTGTAGAACGCTTGACAAACGTGTACCATTCTGCCA

Basic information

species Glycine max
transcript GLYMA08G08190.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagtgattgtatttttctggagtgctttgtaatcttatagttttggctgactgggatttatgacatatgtgaatctc---atgcagATCAACAATCGGTCACTTCAAGATATGTATATATTTGGAGATCCTCTGCTGGTTCCTATTATTATTGTAGAACGCTTGACAAACGTGTACCATTCTGCCA--
     || |  | | ||| ||   |  ||     | |  | |||||  |         |||||    |   |  || |     ||||||| ||||| || ||| | ||||| ||| ||||| ||||||||||| ||| |||||||||| ||||  | |||||  |    ||  || ||||    ||    
--gtttgttcttctctttttgatttagttccc--tttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAA--TGCACCAAGACGCACTT

upper sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtgattgtatttttctggagtgctttgtaatcttatagttttggctgactgggatttatga-catatgtgaatctcatgcagATCAACAATCGGTCACTTCAAGATATGTATATATTTGGAGATCCTCTGCTGGTTCCTATTATTATTGTAGAACGCTTGACAAACGTGTACCATTCTGCCA
    |||| | ||||  | |     |     | |||  ||| |       || |||   |||||| || |  |   |  ||||||||||||||| | |||| ||||||| ||| | |||||||||||||||   |   |||||||||| |||||||||||  |    || |||   |    | | |
----gtgact-tattactatcacacggagcattatccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatcttatagttttggctgactgggatttatgacatatgtgaatctcatgcagATCAACAATCGGTCACTTCAAGATATGTATATATTTGGAGATCCTCTGCTGGTTCCTATTATTATTGTAGAACGCTTGACAAACGTGTACCATTCTGCCA
                ggctgac  putative branch site (score: 3)
      ttatagtttt  TA-rich tract