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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgctgtttgcatgaaattaggaaatttacacaccctccactgtgaaactatagatagatgtatttcttcccctctataattattattttttgttgcagCTCCTTTTGCGTGAGTGGCCAAATGTACTTTCACTCTTGGGAGGTTTAATTGTTATAAAGACATTGATCATAACTGCAATTGGTCCTCGAGTTGGGCTTA

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 11
cctgctgtttgcatgaaattaggaaatttacacaccctccactgtgaa-actatagatagatgtatttcttcccctctataattattattttttgttgcagCTCCTTTTGCGTGAGTGGCCAAATGTACTTTCACTCTTGGGAGGTTTAATTGTTATAAAGACATTGATCATAACTGCAATTGGTCCTCGAGTTGGGCTTA
|||  |  |    ||  ||      |  || | |  |   | |||  | |||||   ||| || ||||  |    |  |       |||||| |  ||||||| ||| | || ||||||||||| || ||||| || |||| ||||||||||||||| |||||| | || ||| | || || |||||||| ||||| || |
cctatttatgttctggtatagcaggaagta-agaagcagaattgtagatactatttttagctgcattttcttttatacaattcatctattttcttgtgcagCTTCTTGTCCGAGAGTGGCCAAACGTGCTTTCGCTTTTGGCAGGTTTAATTGTTATCAAGACACTTATTATATCAGCCATAGGTCCTCGTGTTGGACTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactatagatagatgtatttcttcccctctataattattattttttgttgcagCTCCTTTTGCGTGAGTGGCCAAATGTACTTTCACTCTTGGGAGGTTTAATTGTTATAAAGACATTGATCATAACTGCAATTGGTCCTCGAGTTGGGCTTA
                                       ttatttttt  CT-rich tract
                             tctataattattattt  TA-rich tract