1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtcctgaagagctctttttttcaccattctatatactgaaattgtataatttattgtttagcttgaaaaatataacaactaacagccttgttttccattacagGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCTAGGTTTAGTTGTGTTTTTGGTGATGGATGC
species | Glycine max |
transcript | GLYMA08G06860.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAA GAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTEST: gi|5820220|gb|AI988426.1|AI988426
genomic: CTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAAgtatgtcctg ... tccattacagGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATT
EST: CTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGCTGCAGTTCAAA GAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTEST: gi|254334807|gb|GR844592.1|GR844592
genomic: CTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAAgtatgtcctg ... tccattacagGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATT
EST: CTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAA GAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATT
genomic: CTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAAgtatgtcctg ... tccattacagGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATT
atttattgtttagcttgaaaaatataacaactaacagccttgttttccattacagGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCTAGGTTTAGTTGTGTTTTTGGTGATGGATGC
aactaac putative branch site (score: 1)
ccttgttttccatt putative PPT
aaaaatataacaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctgaagagctctttttttcaccattctatatactgaaattgtataatttattgtttagcttgaaaaatataacaactaacagccttgttttccattacagGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCTAGGTTTAGTTGTGTTTTTGGTGATGGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA