1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaacaaaaatgggtgtactgcattgttaactgagacgaacttttccattaagctttacattttcagttcttgcattttgataagtgcctttttttcccagGGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTC
species | Glycine max |
transcript | GLYMA08G03760.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTTTACTATAAAGGGTTCTCACCTGAAGAAATAGCCTATACTTCTGGTG GGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTTEST: gi|7234746|gb|AW570080.1|AW570080
genomic: ATTTTACTATAAAGGGTTCTCACCTGAAGAAATAGCCTATACTTCTGGTGgtgagcacac ... tttttcccagGGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTT
EST: TACTATAAAGGGTTCTCACCTGAAGAAATAGCCTATACTTCTGGTG GGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTT
genomic: TACTATAAAGGGTTCTCACCTGAAGAAATAGCCTATACTTCTGGTGgtgagcacac ... tttttcccagGGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTT
cattaagctttacattttcagttcttgcattttgataagtgcctttttttcccagGGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTC
ttttgat putative branch site (score: 4)
tgcctttttttccc putative PPT
tttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaaaaatgggtgtactgcattgttaactgagacgaacttttccattaagctttacattttcagttcttgcattttgataagtgcctttttttcccagGGTTATCATTGGTGACCTTCCTAGCCATATGCACTCTTGTTGAGCTTCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
aaacaaa
- - - - -tgggtgt
- - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcctt