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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaatgtttgtccctggctcttaaccatcattttttttgtctcattgcaatgaatgtaactaggatgattttacaaatttctgtagGTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAG

Basic information

species Glycine max
transcript GLYMA08G01790.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01790.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 5
----gtgagttaatgtttgtccctggctcttaaccatcattttttttgt------ctcattgcaatgaatgtaactaggatgattttacaaatttctgtagGTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAG
    |    | ||      |     | | | ||| ||     | | |||       |  || |||  |    | ||   || |||||    | |  |  || |||  ||||||||| | ||||| ||||| |||||||| || || ||||||||||||||| | ||||| |||||||||||||||
tgctgcttatgaagagcactttaatggtatgaacaatggagctatctgtgagaaatttctttcaaaaagaacagcttaaataatttt-tgtactcttacagCTAGCTTGTGGAGGACTCGCTGGGTCTACTGCTGCTTTTTTTACTACTCCTTTTGATGTGGTGAAGACAAGATTACAGACACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtctcattgcaatgaatgtaactaggatgattttacaaatttctgtagGTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAG
                      atgtaac  putative branch site (score: 3)
                                              tttctgt  putative PPT
                                 atgattttacaaattt  TA-rich tract