1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acctagcaaccataagttcatgttctttgatatgtaagattattactgtcagtgagtgacagttgcaacaggttttgaactgaaagcttttatggcacagGAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAACCCAATGACGGTTTTGCAAAGATCTTGTTAGAATTGGATCAG
species | Glycine max |
transcript | GLYMA08G01160.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGGAGAAGCAGAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAA GAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGEST: gi|21677150|gb|BQ629501.1|BQ629501
genomic: GGGAGAAGCAGAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAAgtaagtaaaa ... tatggcacagGAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCG
EST: GGGAGAAGCATAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAA GAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCG
genomic: GGGAGAAGCAGAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAAgtaagtaaaa ... tatggcacagGAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCG
ctgtcagtgagtgacagttgcaacaggttttgaactgaaagcttttatggcacagGAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAACCCAATGACGGTTTTGCAAAGATCTTGTTAGAATTGGATCAG
cttttat CT-rich tract
ttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctagcaaccataagttcatgttctttgatatgtaagattattactgtcagtgagtgacagttgcaacaggttttgaactgaaagcttttatggcacagGAATCATACTTTATCAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAACCCAATGACGGTTTTGCAAAGATCTTGTTAGAATTGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - caaccat
- - - - - - - - - catgttc
- - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - -tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaag