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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgggcccatgcgtcattcttcattatgttggttataaaataaaataaagacaaaaaacaagtttgagctttttctgttttgcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAGTCTGCTATTGATTCTGTGTCATC

Basic information

species Glycine max
transcript GLYMA08G00520.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00520.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 10
gtaagttgggcccatgcgtcattcttcatt-----atg--ttggt----tataaaataaaataaagacaaaaaacaagtttga-gctttttctgttt-----tgcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAGTCTGCTATTGATTCTGTGTCATC
||||  |    ||||||  | ||   || |     |||   ||||    | |  | |    |   |         || ||||| |  | || |||||     |||||| |||||  | || ||||||||||| || ||||| ||||| ||  |||| ||||||||||| || ||||| ||||||||||| || ||||| ||  || |
gtaaagtta-tccatgccccttttcacacttgtggatggcctggtctggtctctatttggttttggttgtggtttaattttgatgggtcttatgtttgtccatgcagCAAGGAAACTGGCATATTTGATCAGATTGCCAACAGATGAGCACCGGCTCAAAGTGGGGATCAGTTGGCTCACAAAGTCTGCCATAGATTCAGTTGCAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttataaaataaaataaagacaaaaaacaagtttgagctttttctgttttgcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAGTCTGCTATTGATTCTGTGTCATC
                                      ctttttctgttttgc  CT-rich tract
     taaaataaaataaaga  TA-rich tract