1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attaaatgatgtttatatatatatatatatatatacagacacacttttcgttgcgtgtagtacaatagtgctatgaaatatgttatttcaatgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCTGCTGATATCACTGCTCTAGTCATTGTGCTCGAAGCCAGACGGAGGAAAG
species | Glycine max |
transcript | GLYMA08G00380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAG GTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCTEST: gi|254336022|gb|GR841347.1|GR841347
genomic: CAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAGgtttgtacgt ... atgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCT
EST: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAG GTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCTEST: gi|14990848|gb|BI316521.1|BI316521
genomic: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAGgtttgtacgt ... atgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCT
EST: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAG GTTAGGCCTCAAACCATTGGCCAGEST: gi|21638885|gb|BM139931.1|BM139931
genomic: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAGgtttgtacgt ... atgatttcagGTTAGGCCTCAAACCATTGGCCAG
EST: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTCCCAAG GTTAGGCCTCAAACCATTGGCCAG-CNAGCAAATTAGGTGGGGTTGAGCCCEST: gi|16342700|gb|BI968295.1|BI968295
genomic: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAGgtttgtacgt ... atgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGT-GAGCCC
EST: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAG GTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCT
genomic: ACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAGgtttgtacgt ... atgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCT
tttcgttgcgtgtagtacaatagtgctatgaaatatgttatttcaatgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCTGCTGATATCACTGCTCTAGTCATTGTGCTCGAAGCCAGACGGAGGAAAG
aaatatgttatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaatgatgtttatatatatatatatatatatacagacacacttttcgttgcgtgtagtacaatagtgctatgaaatatgttatttcaatgatttcagGTTAGGCCTCAAACCATTGGCCAGGCAAGCAGAGTAGGTGGGGTGAGCCCTGCTGATATCACTGCTCTAGTCATTGTGCTCGAAGCCAGACGGAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - tgatgtt
- - - - - - - - - - - - - - - - - -cagacac
- - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg