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gtgagtcagttgtcttcatttttctattcaagcatcctgctgcatctcttgatttattgcctcatgatgacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGAATATCTCTTCATTACCTGTAGTGTCCTTTACTATTGGTGGAAGAACTT
species | Glycine max |
transcript | GLYMA07G39240.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG CTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGEST: gi|9564737|gb|BE474246.1|BE474246
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG CTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGEST: gi|207846405|gb|GD818106.1|GD818106
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG TEST: gi|207846405|gb|GD818106.1|GD818106
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcag-
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG TEST: gi|57575750|gb|CX548725.1|CX548725
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcag-
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG CTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
ctattcaagcatcctgctgcatctcttgatttattgcctcatgatgacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGAATATCTCTTCATTACCTGTAGTGTCCTTTACTATTGGTGGAAGAACTT
tcttgat putative branch site (score: 4)
ttgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcagttgtcttcatttttctattcaagcatcctgctgcatctcttgatttattgcctcatgatgacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGAATATCTCTTCATTACCTGTAGTGTCCTTTACTATTGGTGGAAGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC