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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccatttttccttaatattttatttgggaggaggggcctgatgagagatattaaagacttttagttattaacgtgacacatttttatttgacagGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGC

Basic information

species Glycine max
transcript GLYMA07G36550.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519074|gb|BM188116.1|BM188116
EST:     AAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAAC                         GGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCT
genomic: AAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACgtatgtccat ... tatttgacagGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCT
EST: gi|193387768|gb|FK350973.1|FK350973
EST:     AAGATTGCATACAATAAATACCACCCTTATACCTCATGGATTCCCATAAC                         GGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCT
genomic: AAGATTGCATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACgtatgtccat ... tatttgacagGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgagagatattaaagacttttagttattaacgtgacacatttttatttgacagGGTTTACATATGCTTGCGGAATGTTACACAAAGTTTTCGTAGCTATACGCTGACTCTTTTTGC
                          tattaac  putative branch site (score: 1)
                                         tttttattt  putative PPT
        atattaaagactttta  TA-rich tract