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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacaattattggtatctcctgatttctgttcaacgcccatggttttggctttgttgacagtttaattttactttttcccgtcctgttttgatataattagGCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT

Basic information

species Glycine max
transcript GLYMA07G35280.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35280.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 3'ss of exon 10
tacaattattggt--atctcctgatttctgttcaacgcccatggttttggctttgttgacagtttaattttactttttcccgtcctgttt-tgatataattagGCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT
    || ||  ||     |   | | |    |        |  |||   ||        ||| ||      ||||| |  |  ||||||| || | | |  || || || ||  |||| |||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||
--gcatcatatgtcaggtttagggtcttaaatttgtatgtaaagttcctgcaactaatccagatttgccc-actttataactacctgtttctggtgtgaacagCCAACCGGATTTGGGATGGATGAGGAGATTACAGCAAATACTTGGTCGGAAACACCAGCGTAACCTTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggctttgttgacagtttaattttactttttcccgtcctgttttgatataattagGCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT
             agtttaattttacttt  TA-rich tract