1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...agctgatttcatctttgcttcctgtagaatgaagccacttgttgaaatatatttgtcattctatttaatcagaatttataattgtcatttttatttgaagGCATGGTTTTCTGGAAAAAAAATTGGTCACAGAGTTGGCAGAACTAGAAAGGAAGCTCAAAATAAGGCTGCTGAGGATTCTATCAAACATTTGGCAG
species | Glycine max |
transcript | GLYMA07G31430.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTTTATTTCATCTCTGGTTGCAAGCACTGAACTGCAGTTCTCCATGGAG GCATGGTTTTCTGGNNNNNNNNTTGGTCACAGAGTTGGCAGAACTAGAAAGEST: gi|23727582|gb|BU761825.1|BU761825
genomic: ACTTTATTTCATCTCTGGTTGCAAGCACTGAACTGCAGTTCTCCATGGAGgtatctttca ... ttatttgaagGCATGGTTTTCTGGAAAAAAAATTGGTCACAGAGTTGGCAGAACTAGAAAG
EST: ACTTTATTTCATCTCTGGTTGCAAGCACTGAACTGCAGTTCTCCATGGAG GCATGGTTTTCTGGNNNNNNNNTTGGTCACAGAGTTGGCAGAACTAGAAAG
genomic: ACTTTATTTCATCTCTGGTTGCAAGCACTGAACTGCAGTTCTCCATGGAGgtatctttca ... ttatttgaagGCATGGTTTTCTGGAAAAAAAATTGGTCACAGAGTTGGCAGAACTAGAAAG
aatatatttgtcattctatttaatcagaatttataattgtcatttttatttgaagGCATGGTTTTCTGGAAAAAAAATTGGTCACAGAGTTGGCAGAACTAGAAAGGAAGCTCAAAATAAGGCTGCTGAGGATTCTATCAAACATTTGGCAG
atttaat putative branch site (score: 4)
tttttattt putative PPT
attctatttaatcaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgatttcatctttgcttcctgtagaatgaagccacttgttgaaatatatttgtcattctatttaatcagaatttataattgtcatttttatttgaagGCATGGTTTTCTGGAAAAAAAATTGGTCACAGAGTTGGCAGAACTAGAAAGGAAGCTCAAAATAAGGCTGCTGAGGATTCTATCAAACATTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-gctgatt
- - - - - - - -tgcttcc
- - - - - - - - - - - - - - - - -gccactt