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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtgcatccttttgcaaatactacagaatgcaacctaagcaatattctgcttctgaacgattaatcttttattatgattttctccatttgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31090.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 11
----------------------------------------------aatgtgcatccttttgcaaatactacagaatgcaacctaagcaatattctgcttctgaacgattaatcttttattatg----------attttctcca--tttgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG
                                               || ||||   |||     ||   | | ||| |||| ||      |     || | |||  |    | | | ||  ||          | ||  |  |  ||| | ||| |||| |||||||| |||||||||||||| |||||| | ||| | ||| ||||||| ||||| || |||
gtaagtgtgcatcgcattattgttagatgctaagtaactatggttagatatgcagtttttgattcatga-agataat-caacttacctttcagatgcctaccgaaaaaactctttctgatcttgtcggtcaagtaattggtgtaatttttctttgcagATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315267|gb|GR830260.1|GR830260
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
EST: gi|10255230|gb|BE822996.1|BE822996
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
EST: gi|193400696|gb|FK368337.1|FK368337
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
EST: gi|23728768|gb|BU762445.1|BU762445
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCATTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
EST: gi|14991928|gb|BI317601.1|BI317601
EST:     GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGG                         ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC
genomic: GGGCATTCTGGCTGCCATAGATGTGCTGGGCGACCATGCTTTGATCGGGgtaagagtgc ... tgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgcttctgaacgattaatcttttattatgattttctccatttgccttgtagATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG
               gattaat  putative branch site (score: 3)
                                  ttttctccatttgcct  putative PPT
                attaatcttttattat  TA-rich tract