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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatacttcatcctgattttcaattttcatgtggccacatctacaaatggaaactgaaatttaattaaatgttttcagGTATCAATATATGAAATATATAATGAGACCATCAGAGATTTGTTATCATCAAATCGGTCAAGTGGGAATGATCATACACGAACAGAAAATAGTGCTCCCA

Basic information

species Glycine max
transcript GLYMA07G30580.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30580.1 (Glycine max), 3'ss of exon 11
lower sequence: AT4G21270.1 (Arabidopsis thaliana), 3'ss of exon 12
---------------------gttagtatacttcatcctgattttcaattttcatgtggccacatctacaaatggaaactgaaatttaattaaatgttttcagGTATCAATATATGAAATATATAATGAGACCATCAGAGATTTGTTATCATCAAATCGGTCAAGTGGGAATGATCATACACGAACAGAAAATAGTGCTCCCA
                     | |  |  | |||||        |||  |||  | |  |   || |     ||||   | |||||||  |  |   | | ||||||| || |  || ||||||||||||||||||||||||||| | ||  |||||||  ||| |   |  ||       ||| |||| | | |  |  |  
gtgtacatttcatccaatattgctgattgatttcatt---ggcatcaccttttttctaactttatttgt---tggattttcaaatttatctttaaaatgt-agGTATCGATGTTGGAGATATATAATGAGACCATCAGAGATTTGCTCTCTACAAATCGAACAACTTCTATGGACTTGGTGCGAGCAGACAGTGGCACCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523890|gb|BU082701.1|BU082701
EST:     TCCAGACTAGCCAGTCTCTAAAAGACCAAGGGTGGAAGTACACAATGCAT                         GTATCAATATATGAAATATATAATGAGACCATCAGAGATTTGTTATCATCA
genomic: TCCAGACTAGCCAGTCTCTAAAAGACCAAGGGTGGAAGTACACAATGCATgttagtatac ... atgttttcagGTATCAATATATGAAATATATAATGAGACCATCAGAGATTTGTTATCATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcatgtggccacatctacaaatggaaactgaaatttaattaaatgttttcagGTATCAATATATGAAATATATAATGAGACCATCAGAGATTTGTTATCATCAAATCGGTCAAGTGGGAATGATCATACACGAACAGAAAATAGTGCTCCCA
                                   atttaat  putative branch site (score: 4)
                                              tgttttc  putative PPT
                           aaactgaaatttaatt  TA-rich tract