Sequence
atgc intronic sequence ATGC exonic sequencegttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattgaatattaacttgacagttgtgtgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
Basic information
species | Glycine max |
transcript | GLYMA07G30360.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 3'ss of exon 9
gttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattgaatattaacttgaca--gttgtgtgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
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----------gtacgtcattaaaacattttgaagtgatagtcacgtttagtttatgattttcctgtctttctgatgtgctcttgttaaacat-atg-tgtagTTAGGTGCATTTCTGGCTGGGGCCATTCTTGCAGAGACAAATTTCCGTACCCAAATTGAAGCTGACATAAGGCCATTCAGAGGTTTGCTGCTTGGGTTGT
upper sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 11
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 10
gttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattgaatattaacttgacagttgtg-tgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
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-------------------gttagaattaacacccctacaaaa-atataatttccatctaatatccttactttaatgtcctaactcaattttactctgaagCTTGGAGCTTTTCTTGCTGGAGCACTTCTAGCAGAAACAAATTTCCGAACACAAATTGAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGT
upper sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 10
gttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattgaatattaacttgacagttgtgtgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
|| | || || |||| | | | | | | || || || | | || | || | || |||||||||| || ||||| ||||| ||| | |||||||| ||||| ||| | || |||||||||||||| ||||| |||||||||||||| ||||||||||| |
-----gtttgttatcttgtttaaaagat---------aaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagaatcattaaattgaatattaacttgacagttgtgtgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
tcattaaattgaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattgaatattaacttgacagttgtgtgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC