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gtaagagtagcacctagagttctaatgttctatcttctgtattcttttcttcttgctggtcaagtaaattaacaaatgcttctttgccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAATTGAGGACCTGTACCAGCAACTGAAGCTCTCATATGAG
species | Glycine max |
transcript | GLYMA07G29630.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAEST: gi|193389707|gb|FK355796.1|FK355796
genomic: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: CTGTTAGTTTTTACACCACATCTAATTCCAATG AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAEST: gi|207810719|gb|GD782052.1|GD782052
genomic: CTGTTAG-TTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: TTCAAAAGTAACTGTTAGTTTTACACCACACCTAATTCCAATG AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAEST: gi|208134794|gb|GD927463.1|GD927463
genomic: TTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAEST: gi|58016973|gb|CX703715.1|CX703715
genomic: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
genomic: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
ttcttttcttcttgctggtcaagtaaattaacaaatgcttctttgccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAATTGAGGACCTGTACCAGCAACTGAAGCTCTCATATGAG
aattaac putative branch site (score: 2)
cttctttgccattttt putative PPT
aagtaaattaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtagcacctagagttctaatgttctatcttctgtattcttttcttcttgctggtcaagtaaattaacaaatgcttctttgccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAATTGAGGACCTGTACCAGCAACTGAAGCTCTCATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC