1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgatatgaaatgcattgcaatttgacagaaaactattgagtctctccaaatgcatcattcttttaatatctcttaactaattatcgtttgaataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCAGATGTTGATGTTAGGTTTTTCGCCTCACAAGCACTACAATCTAGTGATC
species | Glycine max |
transcript | GLYMA07G10000.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT GTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGEST: gi|193512327|gb|FK468209.1|FK468209
genomic: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCTgtaagtagct ... aataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGG
EST: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT GTTGTTGAGAGTACCATTCGTCCCTGTTTGGTTGAGCTCAGTGAGGATCCAEST: gi|21600503|gb|BQ610834.1|BQ610834
genomic: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCTgtaagtagct ... aataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCA
EST: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT GTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCAEST: gi|57575814|gb|CX548785.1|CX548785
genomic: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCTgtaagtagct ... aataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCA
EST: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT GTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCA
genomic: TCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCTgtaagtagct ... aataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCA
ccaaatgcatcattcttttaatatctcttaactaattatcgtttgaataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCAGATGTTGATGTTAGGTTTTTCGCCTCACAAGCACTACAATCTAGTGATC
aactaat putative branch site (score: 2)
attcttttaatatctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatgaaatgcattgcaatttgacagaaaactattgagtctctccaaatgcatcattcttttaatatctcttaactaattatcgtttgaataatgaagGTTGTTGAGAGTACCATCCGTCCCTGTCTGGTTGAGCTCAGTGAGGATCCAGATGTTGATGTTAGGTTTTTCGCCTCACAAGCACTACAATCTAGTGATC
tgatatg
- - - -aaatgca
- - - - aatgcat
- - - - - - - - - - - - - - - - - - - - tctctcc