Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagggaaattccttttttgttatggtgtttgaattgcttttgagtaaaagaaactttgctcttaataaggaagttgtttgttttattttttactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT

Basic information

species Glycine max
transcript GLYMA07G09270.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018453|gb|CX705195.1|CX705195
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|192327720|gb|FK021355.1|FK021355
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|19346368|gb|BM891248.1|BM891248
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|8284412|gb|BE021971.1|BE021971
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|254339874|gb|GR857999.1|GR857999
EST:     GGATAAGCTTGGAAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: GGATAAGCTTGGAA-GGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|21256350|gb|BQ453238.1|BQ453238
EST:     ACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: ACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|151399677|gb|EV269548.1|EV269548
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|17023662|gb|BM094696.1|BM094696
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|58017137|gb|CX703879.1|CX703879
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|8284214|gb|BE021773.1|BE021773
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: gi|192333445|gb|FK023974.1|FK023974
EST:     TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG                         GCAATAGCAATGATCCTTCAAGTCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagaaactttgctcttaataaggaagttgtttgttttattttttactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT
              tcttaat  putative branch site (score: 3)
                               tttgttttatttttt  putative PPT
                               tttgttttatttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagggaaattccttttttgttatggtgtttgaattgcttttgagtaaaagaaactttgctcttaataaggaagttgtttgttttattttttactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG