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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttttaaagaacaatcccccgtctctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgttaaaattattattctccatacagGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTG

Basic information

species Glycine max
transcript GLYMA07G07610.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07610.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtgttttaaagaacaatcccccgtct-ctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgtta--aaattat-------tattctccatacagGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTG
|| |||  |||    || | |     | |  | |  |   || | |  |||    |||||      | ||    ||| |  ||  |||   ||||||       | || ||  || |||||||||| ||||||| |||||| || |||||||| || ||||| || ||||| || ||  ||||||||||||||||||| ||||| ||||| |||||||
gtaagtagtttctccaaaacttgttagcccaccaatacatttgaaacggctgatgtttggtacttgagat--ctctgctgcccaattacagaattatgtaattgtgttttctgtatagGTAGCTCGTGGTGATAGGAGTGGGGAGGATGGTATTCCGATGCTACTGAAGATCCCGCGAATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGATTTG

upper sequence: GLYMA07G07610.1 (Glycine max), 3'ss of exon 11
lower sequence: PP1S124_16V6.1 (Physcomitrella patens), 3'ss of exon 10
----------------------------------------------------------------------------gtgagtgttttaaagaacaatcccccgtctctaccattc---ttcacaaagcttgattttggcctcata-catgatgctgttttcctgttaaaattattattctccat-acagGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTG
                                                                             |||||| ||| |  ||   ||  |  | ||  |  |||    | || |    |   || ||  ||| |  |      || |    | | |  |||    || ||    |||||| ||||| || |||||||     | ||| ||||| || |||||||| ||  | |||||||| |||||||| |||||||| ||||||||||| || ||||
gtatgttcatcaatctggcttttcctatttaagacgcgcgtttttgaaattgtttcgacttctaggttgtgaactattgagtgctttgacaaatg-tcgtctttttcatcacttcaagctgacgatcggtagcttgggtatcacaatacacaagtgctgagatatgacgattgaacttttctgggacagGTTGCTCGGGGAGATAAGACCAATGGAGAGGGTATTCCTATGCTTCTTAAAGTTCCACGTCTTTTTGATCCATGGGGTGGCTACAGTATCATTGGTTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggcctcatacatgatgctgttttcctgttaaaattattattctccatacagGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTG
                                        ttattctcc  CT-rich tract
                       ttttcctgttaaaatt  TA-rich tract