Sequence
atgc intronic sequence ATGC exonic sequencegtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTTAACAGGACACTGTTCTTTGAGCTTGTCAAAA
Basic information
species | Glycine max |
transcript | GLYMA07G06780.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06780.2 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G053047_T02 (Zea mays), 3'ss of exon 13
-gtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttg---ttgagagttaaataactgatgcaagc----taccatt--tgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTTAACAGGACACTGTTCTTTGAGCTTGTCAAAA
| ||| ||| | |||| | || | | | | | || || || || | | | || | | | || | | |||||||||||| |||||| ||||||| ||||||||||| | |||||| ||| || || || ||||| | ||
aggaaaataaactaatttcccttggaaaaatgaaaaccccttagaaaaatgaggttcccagattagcccttagtgtttacattatgctgttgattttcagAATGTTTGTTGATGCACTGGATGCACAAATGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG
upper sequence: GLYMA07G06780.2 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G159053_T01 (Zea mays), 3'ss of exon 2
----gtaaactaagttcattttgtcag--ctaagaaa--attgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatt--tgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTTAACAGGACACTGTTCTTTGAGCTTGTCAAAA-
|| | | | || | || || ||| | | || | | | | || | | | || | || | || | || | | |||||||||||| |||||| ||||||| |||||||| || |||||||| ||| || || || ||||| | ||| ||
ctgtgttcattcattttaccctgataggactatcataccatagaaatttaggcttttatatatacttcattagtgtttacagtatgttgttgcttttcagAATGTTTGTTGATGCACTGGATGCACAAATGTACGACAAACACCATCAAACTGGGCATTGCATCTTGAGTCT-TCACAAG
upper sequence: GLYMA07G06780.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 3'ss of exon 12
-------gtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTTAACAGGACACTGTTCTTTGAGCTTGTCAAAA
|| | || | ||| | || || | || | | || | | | ||| | | |||||| | |||| ||||||||||||||||||||||| || || || |||| |||||| || ||| ||||| | | |||| ||||| ||
gtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatct---taatttgaatattgtaccatct--gcagGATGTTTGTGGATGCATTGGATGCACAGATATACAATGACCACCATCAAAGAGGGCACTGCTATCTGAGTTTGTCCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTTAACAGGACACTGTTCTTTGAGCTTGTCAAAA
agttaaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTTAACAGGACACTGTTCTTTGAGCTTGTCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT