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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttaactttatctgtgacattctttcttctcttaactgtctcctttttcttttcttgcaaaatgcacaccatattatgttcatctcccatgaatctgttttcctcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAGCATGAGTTGGTTATTGGAATCATTGATTTCATGAGGCAGTATACCTGGG

Basic information

species Glycine max
transcript GLYMA07G05100.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 3'ss of exon 10
gtaagtcttaactttatctgtgacattctttcttctcttaactgtctcctttttcttttcttgcaaaatgcacaccatattatgttcatctcccatgaatctgttttcctcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAGCATGAGTTGGTTATTGGAATCATTGATTTCATGAGGCAGTATACCTGGG
          |   | | || ||||  ||        | |  | | |       |  |    |||      | | | | | || |   ||    |||||   || ||   ||  || ||  | ||| ||||||||| || || || || || ||||| || || ||||| ||||| |||||| | ||||| |||||||| |||||||||||||| ||||
----------agggtttatgagacaggctga------taagatttattgcaggccagtagcagcattcgatatatcttctcatatgactcattaatgaa---gtcttgtcctcttgtagGGAATTGATGTGATGGATTACTCATTGCTTGTGGGAGTTGACGAGGAGAAACATGAATTGGTTCTGGGAATAATTGATTTTATGAGGCAGTATACATGGG

upper sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 10
gtaagtcttaactttatctgtgacattctttcttctcttaactgtctcctttttcttttcttgcaaaatgcacaccatattatgttcatctcccatgaatctgttttcctcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAGCATGAGTTGGTTATTGGAATCATTGATTTCATGAGGCAGTATACCTGGG
     |  | |   | ||   |    ||||  |     ||   ||  ||||||||| || |   | |||           || | | | |||       |  | |  | | || | |||  | | | ||||||||||||||| || || || ||||| || || ||||| |||||  ||||  | ||||| |||||||| |||||||||||||| ||||
-----tgctgatgct-tccaagtttatcttcttgtaactataggttacctttttctgttttcttataatctg--------taggcttaactct-----gtaggctcccatgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAACATGAACTGGTCTTAGGAATTATTGATTTTATGAGGCAGTATACATGGG

upper sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtcttaactttatctgtgacattctttcttctcttaactgtctcctttttcttttcttgcaaaatgcacaccatattatgttcatctcc-catgaatctgttttcctcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAGCATGAGTTGGTTATTGGAATCATTGATTTCATGAGGCAGTATACCTGGG
|||||| || |       ||||    ||          ||  |      ||    |||||  | | | |  |  |    || | | ||| |     |   | |   ||   ||  | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||||||||||| | ||| | || ||||| || ||||||||||||||||| ||||
gtaagttttgaaaccgattgtgttgctcccaaagtcaatatgtaggctgttccaattttcaagtagattaaatgc----ttgtatccattttaatgtctctttacattatgctattacagTCTGTTGATGTGATGGATTACTCATTACTGGTTGGGGTGGACGAGGAGAAGCATGAGCTAGTTCTCGGGATCATCGACTTCATGAGGCAGTATACATGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252710|gb|BG363613.1|BG363613
EST:     CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCT                         TCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
genomic: CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTgtaagtctta ... tcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
EST: gi|7588058|gb|AW703862.1|AW703862
EST:     CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCT                         TCAGTTGCTGTGATGGACTATTCTNTACTGGTTGGAGTGGATGAAGAGAAG
genomic: CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTgtaagtctta ... tcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
EST: gi|13240098|gb|BG359407.1|BG359407
EST:     CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCT                         TCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
genomic: CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTgtaagtctta ... tcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
EST: gi|17023750|gb|BM094784.1|BM094784
EST:     CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCT                         TCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
genomic: CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTgtaagtctta ... tcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
EST: gi|6133944|gb|AW132337.1|AW132337
EST:     CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCT                         TCAGTTGCTGTGATGGACTATTCTATACTGGTTGGAGTGGATGAAGAGAAG
genomic: CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTgtaagtctta ... tcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
EST: gi|9564839|gb|BE474348.1|BE474348
EST:     CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCT                         TCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG
genomic: CGAAAAGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTgtaagtctta ... tcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgcacaccatattatgttcatctcccatgaatctgttttcctcttgtgcagTCAGTTGCTGTGATGGACTATTCTTTACTGGTTGGAGTGGATGAAGAGAAGCATGAGTTGGTTATTGGAATCATTGATTTCATGAGGCAGTATACCTGGG
                                   tctgttttcctcttgt  CT-rich tract
            atattatgtt  TA-rich tract