1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaacattgagttcctccctcaaaattccacatccaaacacaaccaggctatttatttgttgcacttcaactctgaccattgctatcatgttaaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGCCTGTCTGCAACTGATCTTT
species | Glycine max |
transcript | GLYMA07G04640.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTATTCAGATGGGGAACGCCCAGTCTCTTCTATGTGGAAAACCAATTAAG TGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTEST: gi|13789395|gb|BG651986.1|BG651986
genomic: CTATTCAGATGGGGAACGCCCAGTCTCTTCTATGTGGAAAACCAATTAAGgtgtggattt ... taaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTT
EST: CTATTCAGATGGGGAACGCCCAGTCTCTTCTATGTGGAAAACCAATTAAG TGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTT
genomic: CTATTCAGATGGGGAACGCCCAGTCTCTTCTATGTGGAAAACCAATTAAGgtgtggattt ... taaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTT
ggctatttatttgttgcacttcaactctgaccattgctatcatgttaaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGCCTGTCTGCAACTGATCTTT
ctctgac putative branch site (score: 3)
tatcatgttaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacattgagttcctccctcaaaattccacatccaaacacaaccaggctatttatttgttgcacttcaactctgaccattgctatcatgttaaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGCCTGTCTGCAACTGATCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - -ctccctc
- - - - - - - - - - - - - ccacatc
- - - - - - - - - - - - - - - - - - -cacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattgc