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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggaaagtacaagattaacttttaaaataggaaatactgaaacagaacctacaaatgatggccttttattttaaggtagacacaaattttgttttttatattactggcatttctcagagctttcccttttctgtttttcttttgttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACATGCTAGGCCCCGCTCCCCAGTGTCTGATGGTTCTTTCTATTTCCCGACTA

Basic information

species Glycine max
transcript GLYMA07G04060.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G04060.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 3'ss of exon 11
gtgggaaagtacaagattaacttttaaaataggaaatactgaaacagaacctacaaatgatggccttttattttaaggtagacacaaattttgttttttatattactggcatttctcagagctttcccttttctgtttttcttttgttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACATGCTAGGCCCCGCTCCCCAGTGTCTGATGGTTCTTTCTATTTCCCGACTA
                                                 | || ||||        | ||     |  ||      | | || |  | ||  ||  ||  | | ||||   |  |   |||| || |||| |    ||| | |||||| ||||  ||||| || ||||||||||||||  | ||||||||| ||| ||  ||||| |  ||||||||||| |||||||| |||||||| || ||||
-------------------------------------------------cttataaata-----tctatacaagcacctatcatttactcttataatatacttttttgctaat-ctcatttccattgtttttttggtttt-taacattgctatcagGAATTCAAACTCAATCCCAATGCAAAGAGTTTCATCCCATCTCAAACACCTGTAAGGCCGCCATCCCCAGTGTCAGATGGTTCATTCTATTTTCCAACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193358971|gb|FK325401.1|FK325401
EST:     CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAG                         GAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
genomic: CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagt ... ttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
EST: gi|22524614|gb|BU083425.1|BU083425
EST:     CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAG                         GAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
genomic: CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagt ... ttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
EST: gi|21677086|gb|BQ629437.1|BQ629437
EST:     CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAG                         GAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
genomic: CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagt ... ttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactggcatttctcagagctttcccttttctgtttttcttttgttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACATGCTAGGCCCCGCTCCCCAGTGTCTGATGGTTCTTTCTATTTCCCGACTA
                    ctttcccttttctgtt  CT-rich tract
                                  tttttctttt  TA-rich tract