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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaagaatgagtgatgtttttgaaacaaaactatacatatttttatcttgtgtaagcatgagagatgttttttaaacaaaaactatacatatttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G161969_T01 (Zea mays), 3'ss of exon 6
gtaagaatgagtgatgtttttgaaacaaaactatacatatttttatcttgtgtaagcatgagagatgttttttaaacaaaaact-atacatatt-tttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG
          || |  |||      || ||    |||| ||||| | |  | | || |||  ||   |   || | ||     | ||   | || | | ||||| || ||    ||  | |||  ||| ||||| || |||||||||||||| || ||||||||| || |||||||||||||    | 
----------gtaaattttgatggccagaa----acatttttttttttcatattag-atgttag---taacttgagcatgtgttgatttctgttgtcttcagGTTACCGCAAACCGCTTGCTAGCATCTAAACAGACCATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAA

upper sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G015132_T01 (Zea mays), 3'ss of exon 10
gtaagaatgagtgatgtttttgaaacaaaactatacatatttttatcttgtgtaagcatgagagatgttttttaaacaaaaactatacatatttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG
          || |  |||      || ||   ||   ||  || || | |   |  || | ||    |  | |   |   ||  |   |  | || ||||| || ||    ||  | |||  ||| ||||| || |||||||||||||| || ||||||||| || |||||||||||||      
----------gtaaattttgatggccagaatgttaggcatcattttcatattagatgataacagcc--tgataatgtattgaccttttgttgtctt-cagGTTACTGCAAATCGCTTGCTAGCATCGAAACAGACCATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCA

upper sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 11
lower sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 12
-------------------------gtaagaatgagtgatgtttttgaaacaa---aactatacatatttttatcttgtgtaagcatgagagatgttttttaaa----caaaaactatacatatttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG
                          | |      ||| | ||| |  |  |     || ||| || | | | | ||||   |  || ||  | |  ||   ||        || | || | ||||  |||||||||||| |||||  |   ||| ||||| |||||||||||||| ||||| || || || |||||||||||||||||| | | | |
gcaaatacctatacaaccttatatcttgattgcttgtggtatttctagattacctcgaccatatatctctctgttttgt---actataagccaagaattccgaagttttgttaattgtataaatttg-acagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG

upper sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 11
lower sequence: AT1G54220.2 (Arabidopsis thaliana), 3'ss of exon 11
gtaagaatgagtgatgtttttgaaacaaaactatacatatttttatcttgtgtaagcatgagagatgttttttaaacaaaaactatacatatttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG
    | |  |   || ||  |    ||    |  |   | ||| |    ||  ||  ||     |   |  ||   |   |||| || | ||||| |||||||||||| |||||  |   ||| ||||| |||||||| ||||| || || ||||| || |||||||||||||||||||| | |  
----gtaaaacctatattactctcgcagcctttaagccagtttcaataggttcaacgattctgaaatctcgtt---cgttaactttata-attttgacagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATCCCTCACTATTACTTAACCGTCGATACATGTGTTGACAAACTTATGGC

upper sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 3'ss of exon 12
----------------------------------------------------------------------------gtaagaatgagtgatgtttttgaaa-----caaaactatacatatttttatcttgtgtaagcatgagagatgtt-----------ttttaaacaaaaactatacatatt---tttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG
                                                                              | |  |      | | |||| ||     || | |||| | || | ||  ||  ||| |  ||     |  ||           || | ||   ||  | |   ||||   || |||| ||||||||||||| ||| ||||||| || || |||||||| ||||| ||||| ||||| |||||||||||||||||||| | |  
gtaatacttattccgaactcttgttctagcatcttttggggttccaatgcatattatagaaatccattctatttagccatgtttcttctgtttgtttgcaagctttcagatctatgcttaatctttcctattgttaatatttagcacattgaagcttcatcttctgaagtcaactttttggtattaccttgacagATCACAGCTTCACGCCTATTATTATCGAAGCAGACTATTCCCCATTATTATTTGACAGTGGATACATGTGTTGACAAACTTATGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283933|gb|BE021492.1|BE021492
EST:     CAGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAA                         GTCACAGCTTCACGGCTA
genomic: CAGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAGgtaatttatt ... atttttacagGTCACAGCTTCACGGCTA
EST: gi|298166277|gb|HO009248.1|HO009248
EST:     CAGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAG                         GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTAT
genomic: CAGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAGgtaatttatt ... atttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTAT
EST: gi|192309362|gb|FK000570.1|FK000570
EST:     CAGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAG                         GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTAT
genomic: CAGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAGgtaatttatt ... atttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtgtaagcatgagagatgttttttaaacaaaaactatacatatttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG
                                            tattttt  CT-rich tract
                 agatgttttttaaaca  TA-rich tract