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gtcagtggggaaatgtgtactttcttacaagtatcttgcaactttggtaatttatgttgtagtgttttgtgtgctagctaaaccacttcaacaaatgttctttactaacttattttgtttgtttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACATATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATAGAAGAAGGGGAT
species | Glycine max |
transcript | GLYMA07G03890.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCACTACCTG-TGAATCTAAAGCTACGGAAGCAAG AGCTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGTCTGATAAATCACAEST: gi|58020327|gb|CX707069.1|CX707069
genomic: GCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAGgtcagtgggg ... tttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACA
EST: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAG AGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACAEST: gi|58016785|gb|CX703527.1|CX703527
genomic: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAGgtcagtgggg ... tttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACA
EST: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAG AGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACAEST: gi|10231240|gb|BE800056.1|BE800056
genomic: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAGgtcagtgggg ... tttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACA
EST: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAT AGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAATTCACAEST: gi|298182438|gb|HO026613.1|HO026613
genomic: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAGgtcagtgggg ... tttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACA
EST: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAG AGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACA
genomic: GATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAGgtcagtgggg ... tttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACA
gctaaaccacttcaacaaatgttctttactaacttattttgtttgtttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACATATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATAGAAGAAGGGGAT
tactaac putative branch site (score: 0)
tttgttt putative PPT
tttactaacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtggggaaatgtgtactttcttacaagtatcttgcaactttggtaatttatgttgtagtgttttgtgtgctagctaaaccacttcaacaaatgttctttactaacttattttgtttgtttattacagAGGTGTTTACCCTCCTGCATCGGAGTATGTGAACCAGGCTGATAAATCACATATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATAGAAGAAGGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG