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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACGTACCAAGAAT

Basic information

species Glycine max
transcript GLYMA07G02290.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 12
------gttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaacttta-agGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACGTACCAAGAAT
       ||  |  ||  ||| | | | ||    | ||     | ||   ||||| |  |  || |   |  |||| |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| || || |||||||| |||||| ||||||||||||| || |||||||| |
gttagtttttctcttttctttttatatactagttatttcttttactgcccaatcttacttccatctaaaacatttacagGATATGAGTGTGGGTACATCATGGAACATATTGAGGCCCGAGACGGTTGAATCACTGTTTTACCTCTGGCGTTTAACTGGCAACAAGACATACCAAGAGT

upper sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 7
------gttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaacttta-agGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACGTACCAAGAAT
       ||  |  ||  ||| | | | ||    | ||     | ||   ||||| |  |  || |   |  |||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||| || || |||||||| |||||| ||||||||| ||| || |||||||| |
gttagtttttctcttttctttttatatactagttatttcttttactgctcaatctcatttccatctaaaacatttacagGATATGAGTGTGGGTACATCATGGAACATATTGAGGCCCGAGACAGTTGAATCACTGTTTTACCTCTGGCGTTTAACTGGCAGCAAGACATACCAAGAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924044|gb|AW830052.1|AW830052
EST:     CAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAG                         GACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
genomic: CAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttatt ... gaactttaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAGTCCCTCTTTTACCTTTGGCGTCTAACTGGCAACAAAACGTACCAAGAAT
           aatttgaaaattgtgt  TA-rich tract