1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttgtaattgttgagatgaagattggttgtttctttgttgtgttatttcttccttggtaattgctatgagtgatgtgattttcaaccttttcctgttcaagGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGG
species | Glycine max |
transcript | GLYMA07G01480.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAG GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAEST: gi|58014784|gb|CX701526.1|CX701526
genomic: GGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAGgttgatattc ... cctgttcaagGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCA
EST: GGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAG GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAEST: gi|208203764|gb|GE006023.1|GE006023
genomic: GGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAGgttgatattc ... cctgttcaagGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCA
EST: GACCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAG GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCA
genomic: G-CCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAGgttgatattc ... cctgttcaagGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCA
ttcttccttggtaattgctatgagtgatgtgattttcaaccttttcctgttcaagGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGG
ttttcaaccttttcct CT-rich tract
attttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaattgttgagatgaagattggttgtttctttgttgtgttatttcttccttggtaattgctatgagtgatgtgattttcaaccttttcctgttcaagGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -tgttgag
- - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacctt