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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattccacttgtccttcatagtatgcttgcttgtccaagagtttggacttctaacatcataatggatctattccagGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACGGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTA

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 11
----gtaataatt-ccacttgtccttcatagtatgcttgcttgtc--caagagtttggacttctaacatcataatggatctattccagGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACGGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTA
      || |||| |    | |  | |||    |||||   | ||    |   |||||| |  | | |   | | |    |||| ||||| ||||| ||||||||||| ||  | ||||||||  | |||||||| ||||| ||||||   |||||||| |||||| |||||| ||  ||  |||| |
gtaaaaaaaaattgctgtgtataatgcatgtattgcttttctttcactgatgatttggattatttatactttga-gatggtatttcagGTCAATGAGGAGCATGTTGGGTTAGTCATGGAGGCACTCTCTCATAGGCGAGCTGAGGTTGTTGACATGGGCCCTGTTGCAGGAAGTGAGGGCAGAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238336|gb|BE807152.1|BE807152
EST:     AAACTGAAAGCGG-CAGAAGCTTGAGCCTGTAGAAGAAGTTACAATTGAG                         GTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGA
genomic: AAACTGAAAGCGGTCAGAAGCTTGAGCCTGTAGAAGAAGTTACAATTGAGgtaataattc ... tctattccagGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcttgcttgtccaagagtttggacttctaacatcataatggatctattccagGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACGGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTA
                           ttctaac  putative branch site (score: 1)
                                             tctattcc  putative PPT
                                  atcataat  TA-rich tract