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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatagagtatttttcttctgtttataaatttttaaatatgatgcagaattgctgataaggttttccttgcttaatttacagGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACAACAACACGTGTGGAAAATGGTACTCCTGGAAAACAATATACAATCAAAC

Basic information

species Glycine max
transcript GLYMA06G41600.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41600.1 (Glycine max), 3'ss of exon 11
lower sequence: AT4G27180.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaatatagagtatttttcttctgtttataaatttttaaatatgatgcagaattgctgataaggttttccttgctta-at-ttacagGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACAA---------CAACACGTGTGGAAAATGGTACTCCTGGAAAACAATATACAATCAAAC
      ||    |  ||        ||| ||||      | ||||||||    |  |  ||    ||  || |  || || ||  ||||||| ||||| ||||||||||||||||||||  | |||||  | || ||||         |     | |  || |||||   | ||    |  |||||          
-----gtaacaaaccttataaagacttacaaat------agatgatgcattcata-tagtatttattggctggtctatatgttgtagGTGTCTATGTTAGAAATATACAACGAAACGATTAGGGATCTCTTGTCAACAAACAAGGAAGCTGTGAGAGCAGACAATGGCGTTTCTCCGCAGAAATATG---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057105|gb|CA800019.1|CA800019
EST:     TTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAG                         GTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACA
genomic: TTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGgtaatataga ... taatttacagGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACA
EST: gi|207783369|gb|GD755901.1|GD755901
EST:     TTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAG                         GTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACA
genomic: TTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGgtaatataga ... taatttacagGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACA
EST: gi|7591541|gb|AW707272.1|AW707272
EST:     TTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAG                         GTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACA
genomic: TTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGgtaatataga ... taatttacagGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttttaaatatgatgcagaattgctgataaggttttccttgcttaatttacagGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACAACAACACGTGTGGAAAATGGTACTCCTGGAAAACAATATACAATCAAAC
                                  ttttccttgctt  CT-rich tract
     ttaaatatgat  TA-rich tract