1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacttaaataaacatcatccttctagaacatttgcttttagttatgtcacttgagaatagtttaattttcatttttgtgttgcatatgttctgcaatctttgcccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG
species | Glycine max |
transcript | GLYMA06G24520.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|208319590|gb|GE110755.1|GE110755
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|208279004|gb|GE079161.1|GE079161
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTAGGAAAAAGGTTEST: gi|208067430|gb|GD865294.1|GD865294
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTT-GGAAAAAGGTT
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGG-AAGAGTTACTTGGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTEST: gi|193709470|gb|FK642504.1|FK642504
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTG-AAAGCTGCCAAGAATTACTTGGAAAAAGGTT
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|193692531|gb|FK627664.1|FK627664
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|208215130|gb|GE014273.1|GE014273
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|193692555|gb|FK627674.1|FK627674
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|208232383|gb|GE035804.1|GE035804
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|207835746|gb|GD809173.1|GD809173
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|193451568|gb|FK421418.1|FK421418
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|193464344|gb|FK431852.1|FK431852
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: AAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCEST: gi|193703975|gb|FK645195.1|FK645195
genomic: AAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
ccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG
tactaat putative branch site (score: 1)
tctactaatccttttt CT-rich tract
taatcctttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttaaataaacatcatccttctagaacatttgcttttagttatgtcacttgagaatagtttaattttcatttttgtgttgcatatgttctgcaatctttgcccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC