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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actactgatttttttttccctttttggatgattcggccttattactttgctcatgttacgtatttaacgtctgacttatgaagctcctttctttgtgcagCCTCATGGATTCTTCAACTGTTCCCCTGCAGTAGATGTTCCGCCAAATGCATGTGAAATGGATTCTAAAGATAATGACATTAAGGATAATGGTTCTTCGA

Basic information

species Glycine max
transcript GLYMA06G18810.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467407|gb|CD409435.1|CD409435
EST:     TGGAAGACTGGCCTGTTATGCCAGTAGAGCGCATTGGTTTTATGCTCACG                         CCTCATGGATTCTTCAACTGTTCCCCTGCAGTAGATGTTCCGCCAAATGCA
genomic: TGGAAGACTGGCCTGTTATGCCAGTAGAGCGCATTGGTTTTATGCTCACGgtaattattt ... ctttgtgcagCCTCATGGATTCTTCAACTGTTCCCCTGCAGTAGATGTTCCGCCAAATGCA
EST: gi|209704673|gb|BW675881.1|BW675881
EST:     TGGAAGACTGGCCTGTTATGCCAGTAGAGCGCATTGGTTTTATGCTCACG                         CCTCATGGATTCTTCAACTGTTCCCCTGCAGTAGATGTTCCGCCAAATGCA
genomic: TGGAAGACTGGCCTGTTATGCCAGTAGAGCGCATTGGTTTTATGCTCACGgtaattattt ... ctttgtgcagCCTCATGGATTCTTCAACTGTTCCCCTGCAGTAGATGTTCCGCCAAATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctcatgttacgtatttaacgtctgacttatgaagctcctttctttgtgcagCCTCATGGATTCTTCAACTGTTCCCCTGCAGTAGATGTTCCGCCAAATGCATGTGAAATGGATTCTAAAGATAATGACATTAAGGATAATGGTTCTTCGA
                       gtctgac  putative branch site (score: 3)
                                      ctcctttctttgtgc  putative PPT
               tatttaa  TA-rich tract